FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005088205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005088205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16583002
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACACTA38700.010.7900318
CTACACT49700.08.9813367
CTAGCTC9250.08.71757235-39
TCTAGCT11400.07.45240435-39
ACACTAT59250.07.29068859
TCTCTAG16900.05.87911135-39
ACAACTA89800.05.4521413
ATACAAC94400.05.37520071
TACAACT95350.05.3625052
CTCTAGC17800.05.339163335-39
ACTACAC89500.05.30916936
CTAGATC11900.05.202958140-144
Produced by FastQC (version 0.11.5)