FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005088319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005088319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18443590
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATGAGT93150.06.1505651
CACACGT211200.05.5837064140-144
ACACGTC215050.05.503829140-144
CACGTCT195150.05.4821744140-144
GATCGGA394300.05.3717837140-144
TAGATCG109650.05.3577704140-144
CTAGATC28950.05.2721753140-144
CCAGTAA92050.05.23965557
CATTGAC171750.05.1515021
Produced by FastQC (version 0.11.5)