EGAF00005088347 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005088347
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16525315
Sequences flagged as poor quality	0
Sequence length	150
%GC	54

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACACTA	4440	0.0	18.81081	7
CACTATA	4605	0.0	17.824104	9
ACACTAT	4810	0.0	17.363827	8
AAACACT	8040	0.0	10.656716	6
GAGCACA	13210	0.0	8.611658	9
AGAGCAC	14670	0.0	8.245398	8
CAAACAC	11175	0.0	7.9248323	5
GATCGGA	15865	0.0	7.5335646	1
TCGGAAG	18035	0.0	6.4674244	3
ATCAAAC	14665	0.0	6.333447	3
TCAAACA	14190	0.0	6.291755	4
TATTTAG	6155	0.0	6.1998377	9
ACTATAG	2965	0.0	5.9736934	10-14
ATCGGAA	20160	0.0	5.964286	2
GCCCTTA	6220	0.0	5.9035373	4
AAGAGCA	21170	0.0	5.7477565	7
ATATCAA	20320	0.0	5.456693	1
CTATAGC	3445	0.0	5.4339623	10-14
CACCCTA	3620	0.0	5.2906075	75-79