EGAF00005088453 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005088453
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17198339
Sequences flagged as poor quality	0
Sequence length	150
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	26195	0.0	8.855857	1
TCGGAAG	27285	0.0	8.846122	3
AGAGCGT	27810	0.0	8.594373	8
ATCGGAA	30585	0.0	7.7771325	2
AAGAGCG	31755	0.0	7.6859493	7
CTAAGAG	3070	0.0	7.2694306	8
GAGCGTC	33585	0.0	7.181342	9
GGAAGAG	37245	0.0	6.4756064	5
GAAGAGC	38435	0.0	6.331308	6
GTGTGTA	7475	0.0	6.2601624	35-39
CCCTAAG	3225	1.891749E-10	6.250747	6
CGGAAGA	41490	0.0	6.1474056	4
TAGATCT	8190	0.0	6.118015	40-44
TACCCTA	3655	1.6370905E-11	6.110917	4
TGTGTAG	7675	0.0	5.928214	40-44
TACAGTG	8795	0.0	5.730954	30-34
AGTGTAC	8325	0.0	5.6908793	25-29
GAGTGTA	9535	0.0	5.134828	25-29
ACAGTGG	10440	0.0	5.007268	30-34