EGAF00005088471 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005088471
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14974120
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGTCC	3725	0.0	15.463087	9
CTTAGTC	3955	0.0	14.745891	8
CTCCCTA	4435	0.0	11.851185	7
CCTTAGT	6110	0.0	10.016366	7
CCCTATT	5750	0.0	9.14087	9
GATCGGA	11750	0.0	8.394894	1
TAGCTCC	7315	0.0	8.36637	4
TCCCTAT	7445	0.0	7.640027	8
TCCTTAG	9035	0.0	7.012728	6
TCGGAAG	14410	0.0	6.5454545	3
GCTCCCT	8925	0.0	6.4537816	6
GTAGCTC	8595	0.0	6.4502616	3
ATCGGAA	17610	0.0	6.173765	2
TACCTCC	11315	0.0	5.9814405	2
CTCCTTA	11950	0.0	5.904603	5
AGCTCCC	10565	0.0	5.656413	5
CTACCTC	11700	0.0	5.5384617	1
ATGTAGC	11590	0.0	5.466782	1
AGAGCGT	18055	0.0	5.4633064	8