FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005088497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005088497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18486750
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAGAC26050.012.9904036
TTAGACC23050.012.8069417
TAGTTAG31300.010.3514384
TAGACCC36000.09.68
AGTTAGA40850.08.2839665
GTAGTTA63550.05.6648313
Produced by FastQC (version 0.11.5)