FastQCFastQC Report
Sat 11 May 2024
EGAF00005088717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005088717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15637464
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAGTCAAATCTCGTAT614160.3927491056094518TruSeq Adapter, Index 5 (97% over 38bp)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC480440.3072365186580126No Hit
CCCTTTTCCACACGTGAGCCGATTTTTGGGACGTGGGGGATTTGCCCAGA223010.14261263846874403No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG187780.12008340994422115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)