FastQCFastQC Report
Sat 11 May 2024
EGAF00005088718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005088718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15637464
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCTCTTCAGTGTAGATCT653940.4181880130947064Illumina Single End Sequencing Primer (100% over 32bp)
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA303590.19414273311836241No Hit
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG292460.18702521073749556No Hit
CCCTTTTCCACACGTGAGCCGATTTTTGGGACGTGGGGGATTTGCCCAGA244610.15642561990870132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)