EGAF00005089677 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005089677
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15454329
Sequences flagged as poor quality	0
Sequence length	150
%GC	56

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	18310	0.0	10.655345	9
TCGGAAG	18100	0.0	10.584823	3
GATCGGA	18510	0.0	10.342905	1
AGAGCAC	19200	0.0	9.823961	8
ATCGGAA	20795	0.0	9.461773	2
AAGAGCA	25790	0.0	7.425349	7
AGTCACA	4625	0.0	6.9425807	25-29
CGGAAGA	28460	0.0	6.8552136	4
GGAAGAG	30400	0.0	6.607196	5
ACACGTA	5320	0.0	6.414742	30-34
CAGTCAC	6245	0.0	6.2944536	25-29
TAATTGC	5520	0.0	5.608103	5
GAAGAGC	37755	0.0	5.5107403	6
CCAGTCA	7105	0.0	5.410969	25-29
TCACACG	6570	0.0	5.2161975	30-34
CTAGAGG	1190	0.0	5.2028584	50-54
CACGTAT	6990	0.0	5.0469775	30-34
GTCACAC	6780	0.0	5.0332265	25-29