EGAF00005089679 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005089679
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18055781
Sequences flagged as poor quality	0
Sequence length	150
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGAGT	5295	0.0	10.505003	1
GTGAGTA	5915	0.0	9.872977	2
TGAGTAG	5570	0.0	9.054928	3
CACTATA	8505	0.0	8.71862	9
ACACTAT	8935	0.0	8.379606	8
GAGTAGG	6865	0.0	8.075017	4
TAGGAGG	6775	0.0	7.969583	7
AACACTA	10655	0.0	6.75663	7
AAACACT	11655	0.0	6.4239874	6
CAAACAC	11165	0.0	6.3835177	5
GGCCCTA	2670	0.0	5.5544896	45-49
GATCGGA	30760	0.0	5.407459	140-144
GGAGGGG	11090	0.0	5.3880467	9
GCCCTAA	2755	0.0	5.383117	45-49
CACACGT	16775	0.0	5.38273	140-144
TAGATCG	9270	0.0	5.3130507	140-144
AGCACAC	20590	0.0	5.0988092	140-144
CACGTCT	15740	0.0	5.050472	140-144
AGATCGG	34370	0.0	5.0489964	140-144