EGAF00005089789 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005089789
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18221629
Sequences flagged as poor quality	0
Sequence length	150
%GC	54

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCACA	18070	0.0	9.998272	9
AGAGCAC	18985	0.0	9.36474	8
TCGGAAG	21975	0.0	8.291484	3
CTAGATC	1405	0.0	8.094617	140-144
GATCGGA	22910	0.0	8.047675	1
CTAGTCC	930	0.0	7.8983283	75-79
TAACTAG	1005	0.0	7.59374	135-139
GCTAGTC	1140	0.0	7.0750766	75-79
ATCGGAA	26510	0.0	7.0091624	2
AAGAGCA	27870	0.0	6.7149963	7
GGCTAGT	1210	0.0	6.546743	75-79
ACTAGAT	1300	0.0	6.0920753	135-139
GGAAGAG	34035	0.0	6.0273786	5
GAGCTAG	1325	0.0	5.759239	50-54
AGTCACG	6800	0.0	5.526256	25-29
CGGAAGA	36555	0.0	5.3952694	4
GAAGAGC	37355	0.0	5.3182616	6
CAGTCAC	7505	0.0	5.0838723	25-29