FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005090389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005090389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13594516
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGCACA226550.010.7429
AGAGCAC233850.010.437468
GATCGGA243900.010.03690051
TCGGAAG260950.09.5190663
ATCGGAA295650.08.6210042
CGGAAGA350250.07.3593154
AAGAGCA348250.07.318887
GGAAGAG395100.06.760825
GAAGAGC408400.06.258576
CACTGTA72900.06.083950535-39
AGTCACA77800.05.99691525-29
CAGTCAC87900.05.750170725-29
GTCACAC81700.05.640146725-29
CCACTGT81300.05.561623635-39
CTAGATC18700.05.159358140-144
TAGATCG65000.05.0732307140-144
Produced by FastQC (version 0.11.5)