FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005091836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005091836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21887158
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTCC19000.09.85093275-79
GCTAGTC22150.08.1250175-79
CTTGTGG136100.07.3007972
TCTTGTG134500.06.8687781
GGCTAGT28350.06.703605775-79
TACGTTA67000.05.803213
AGGCTAG28800.05.49905275-79
GAGCTAG29550.05.31273850-54
TACCACA125500.05.27607359
GTTACGT68400.05.27601151
ACATACC127300.05.20325336
TTGTGGA190050.05.1525283
TGTGGAA197950.05.12875464
Produced by FastQC (version 0.11.5)