EGAF00005091982 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005091982
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21120630
Sequences flagged as poor quality	0
Sequence length	150
%GC	53

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTGAGT	3595	0.0	12.522426	1
TGAGTAG	3380	0.0	12.367977	3
TAGCATG	3675	0.0	11.557354	8
GTGAGTA	5010	0.0	8.631791	2
CCTTTAG	5880	0.0	7.5972366	4
GAGTAGG	5700	0.0	7.331526	4
ACTAGCC	2380	0.0	7.260011	110-114
TAGGAGG	7605	0.0	6.62617	7
TTAGCAT	7195	0.0	6.6035414	7
CTAGGAG	1540	0.0	5.796946	50-54
GGTACTA	6075	0.0	5.4506407	5
CTAGGTC	1905	0.0023207194	5.2905006	7
CTAGCCT	2350	0.0	5.2693777	115-119
CTTTAGC	8955	0.0	5.2249694	5
AGTAGGA	8550	0.0	5.1357007	5
TGCTTAG	4355	0.0	5.092082	55-59
GCTTAGT	3585	0.0	5.061092	55-59
AACTAGC	3845	0.0	5.018125	110-114