FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17469618
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTCAT237100.07.43066261
CCTTCAC243700.06.69390961
CCTGCAT238550.06.1393841
CACACGT148750.05.846915140-144
CCTACAT111800.05.7716641
AGTCACA67200.05.485516140-144
CCTTGAT231550.05.2916941
CATTACC112650.05.27758841
CCTGCAC295250.05.13226651
CCTACAC93250.05.13154271
TACTAGT18400.0081978835.12245751
CCTTGAC196150.05.06389951
CATGGAT123150.05.06310371
CATTCAT129250.05.04852871