FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17809478
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGAGT63100.016.8736931
TAACCCC63650.016.5134059
GTGAGTA66850.015.4102892
ATAACCC110300.09.6598068
TAGCATA166550.06.48378858
CCTTTAG178050.06.42903664
GTATAAC175250.06.40838776
TGAGTAT185450.06.1764873
AACCCCC37450.06.11304410-14
GAGTATA193350.05.88306474
TATAACC209700.05.42426447
CTTTAGC267050.05.014215
Produced by FastQC (version 0.11.5)