EGAF00005092721 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005092721
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14945443
Sequences flagged as poor quality	0
Sequence length	150
%GC	52

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	17070	0.0	8.128023	1
AGAGCGT	17525	0.0	7.8467975	8
CCTAGAG	840	0.0073402436	7.7140627	3
GCTAACT	3605	0.0	7.388336	30-34
CTAACTC	3925	0.0	6.822656	30-34
TCGGAAG	21210	0.0	6.7890544	3
TAACTCG	4100	0.0	6.742918	35-39
GGGGGGG	6820	0.0	6.709157	1
GAGCGTC	21610	0.0	6.630384	9
AAGAGCG	21470	0.0	6.6060824	7
TGCTAAC	4330	0.0	6.2842593	30-34
ATCGGAA	23275	0.0	6.2524776	2
GTGCTAA	4705	0.0	6.150588	30-34
TAGATCT	5245	0.0	5.792794	40-44
GAAGAGC	26605	0.0	5.466356	6
TGTGCTA	5755	0.0	5.2785826	30-34
ACTCGTG	5320	0.0	5.2778068	35-39
GGAAGAG	28050	0.0	5.2617745	5
CTCGTGT	5695	0.0	5.208396	35-39