EGAF00005092725 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005092725
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17117930
Sequences flagged as poor quality	0
Sequence length	150
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	28105	0.0	7.6214643	1
GATCTAG	885	0.0	6.9960117	80-84
AGAGCGT	30855	0.0	6.6301045	8
GAGCGTC	31475	0.0	6.5681605	9
CTAGATC	2365	0.0	6.5144267	140-144
TCGGAAG	33720	0.0	6.4290137	3
AAGAGCG	34605	0.0	6.18223	7
ATCGGAA	36940	0.0	6.102571	2
TAACTAG	1045	0.0	5.787099	135-139
GAAGAGC	40760	0.0	5.5668116	6
GAGCTAG	1155	0.0	5.485258	50-54
GGCTAGT	1205	0.0	5.3770266	75-79
GCTAGTC	1100	0.0	5.366707	75-79
TAGATCT	8425	0.0	5.3661933	40-44
GGAAGAG	42825	0.0	5.3627014	5
CTAGTTA	1050	0.0	5.3479514	85-89
AGGCTAG	1240	0.0	5.109139	75-79