FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30376175
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTTCT839377127.632745070766813No Hit
CTTTGCGG757979924.953105517728943No Hit
AAGCAGTC754891524.851433730547047No Hit
TGCACAAA644120721.2047994851228No Hit
CTTTGCGA480400.15815026085410688No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers