FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34353288
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1128897332.86140470746206No Hit
CTTATGAG830869124.18601386859971No Hit
GAGGATCT821985223.927409801355843No Hit
AGACCATA594846217.315553608725896No Hit
AGCCCATA1348830.3926349058640326No Hit
TCCTGCGA972120.2829772800786929No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)