FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38846608
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT1166842230.037170812957463No Hit
GGATGCCG1068561927.507212470133812No Hit
TATGATTC824375021.221286553513245No Hit
ATGCTGAA763286519.6487296908909No Hit
CCCCCAGT597230.15374057884281686No Hit
GGCTGCCG489960.12612684227153115No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)