FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51229668
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA605950.11828107103875823No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACCTG226650.017.7957941
ATCGAGT186350.017.6299381
GCGCGAT152950.017.5631081
CGGAGCT183150.017.4956651
TGACGGC185800.017.3699321
GACTAAC168200.017.3561331
CCGGTAG153850.017.349861
CTTAACT325350.017.2508981
CGATTGA169850.017.1109811
GTAACTG169250.016.988461
CTCGAAA174550.016.9367241
GGTATTG191100.016.9352911
GGGATGA178200.016.920941
ATAGACC186550.016.8819371
CAATGGA195100.016.847298
ATAACGC185350.016.7915921
TGGCCAG204500.016.7547861
ACACCCT179700.016.6683881
CCGGGAT114950.016.6263351
GGGAGAT125550.016.6245771
Produced by FastQC (version 0.11.5)