FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30973021
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1034542633.40141086011597No Hit
TACTATAG705210422.76853781876815No Hit
ACAAGGTA685667922.137585481248344No Hit
GTGGTACC578025618.662228653769354No Hit
GTGGTCCC562160.18149989308437173No Hit
CGTCCCGG495030.15982619196235331No Hit
CGTCCCGA463520.1496528220479365No Hit
GTGGTACA424370.13701278929168711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)