FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30250512
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1010585233.407209768879284No Hit
TACTATAG683682622.60069515517622No Hit
ACAAGGTA672063022.21658264825402No Hit
GTGGTACC563576318.63030615812387No Hit
GTGGTCCC542230.17924655291784813No Hit
CGTCCCGG482430.159478292466587No Hit
CGTCCCGA462520.1528965856842357No Hit
GTGGTACA435650.144014091397858No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)