FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48138179
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC1473763830.615279402239125No Hit
CTGACGCG1296303326.928798033677175No Hit
TCCTTCTT996156620.69369096824373No Hit
AAAGAAGA833852417.32205948214202No Hit
CTGCCGCG2442270.507345739023489No Hit
AAAGAAGC1434600.298017089512256No Hit
TCCTTCTA1075780.2234775021298583No Hit
GGTAGTAC1061720.22055674353614416No Hit
GGTCGTAA982290.2040563270995357No Hit
GGTCGTCC962230.1998891565881626No Hit
TCCTTATT653800.13581735196090405No Hit
AAAGCAGA604450.12556561393815915No Hit
CTGACGCA543380.11287921796958711No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)