FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36801590
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1007652627.380681106441322No Hit
TCAGCCGT975125726.49683614213408No Hit
GGTCAATA900181424.46039423840111No Hit
ATCTTTAG689605818.73847841900309No Hit
CAGCGGCC1047370.284599116505564No Hit
TCCGCCGT916730.24910065027081713No Hit
TCAGCCGA424920.1154624025755409No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)