FastQCFastQC Report
Wed 1 May 2024
EGAF00005092795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30337449
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length98
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT1829820.6031555257002658Clontech SMART CDS Primer II A (100% over 26bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG869370.2865666127695839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)