FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37874870
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC1387605336.636569313637246No Hit
GGTTTACT826868421.83158384438019No Hit
CTAAACGG761923520.116861127180105No Hit
AACCGTAA756111819.96341637608261No Hit
ACCCGTAA514930.13595558215777373No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)