FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39879027
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC1462320236.66890368212845No Hit
GGTTTACT871295121.84845432663139No Hit
CTAAACGG800619020.076191929156145No Hit
AACCGTAA794669019.926990696137096No Hit
ACCCGTAA498460.12499301951374088No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)