FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56375957
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1982879135.17242465613488No Hit
GTACGCGG1515528326.88252901853178No Hit
CCTTTGTC1453198425.776917631748585No Hit
TAGGATAA47262118.38338052514124No Hit
AGCACCCT1849280.328026360599076No Hit
AGCCCACT1354120.2401945921733976No Hit
CCTTTGTA1255250.22265697414236355No Hit
GTCCGCGG1226330.21752712774348115No Hit
GTAAGCGG1048900.18605449127896842No Hit
CGCACACT863590.15318409583716688No Hit
AGCACACA702640.12463469134546133No Hit
AGCACAAT701780.12448214404590952No Hit
AGAACACT620540.11007174565568793No Hit
GTACGAGG615430.10916533088742067No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)