FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56051591
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1960378334.974534442742225No Hit
GTACGCGG1506204026.87174392605555No Hit
CCTTTGTC1443774025.757948601316237No Hit
TAGGATAA46861828.360479901453646No Hit
AGCACCCT2024570.3611975974062895No Hit
AGCCCACT1444890.25777858830091016No Hit
GTCCGCGG1409120.25139696748304613No Hit
CCTTTGTA1259780.22475365596669683No Hit
GTAAGCGG1032930.18428201261940985No Hit
CGCACACT969580.1729799248695724No Hit
AGCACAAT709980.1266654500494018No Hit
AGCACACA698910.12469048380803321No Hit
GTACGAGG630840.11254631469782901No Hit
AGAACACT627720.11198968464606117No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)