FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54930540
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCACACT1933803335.2045201084861No Hit
GTACGCGG1469736426.75627073755328No Hit
CCTTTGTC1417855325.81178521092274No Hit
TAGGATAA46076018.388049707867427No Hit
AGCACCCT1865950.3396926372833764No Hit
AGCCCACT1355270.24672431765644393No Hit
CCTTTGTA1329780.2420839117911457No Hit
GTCCGCGG1222130.222486434686424No Hit
GTAAGCGG1030680.18763332747138478No Hit
CGCACACT874420.15918649261412687No Hit
AGCACAAT737480.13425682689447435No Hit
AGCACACA685440.1247830441863488No Hit
GTACGAGG645500.11751204339152682No Hit
AGAACACT638260.11619401520538485No Hit
AGCAAACT574020.1044992457747548No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)