FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33955255
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1115267432.84520761219434No Hit
CTTATGAG818425624.10306151433703No Hit
GAGGATCT810130923.85877826569113No Hit
AGACCATA585614817.246661820092353No Hit
AGCCCATA1287360.37913424593630646No Hit
TCCTGCGA978450.28815863700626015No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)