FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30869017
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC827852626.818236550907987No Hit
CTCCTAGT738066023.909604896067798No Hit
GATGCCAA734262923.786403694034053No Hit
AGGTATTG689648422.341119576305264No Hit
GCTGCCAA458510.1485340462898446No Hit
TCACGGCC339710.1100488557831304No Hit
GATGCAAA333190.10793670559707165No Hit
ACAAGGCC319930.10364113635364547No Hit
TCAAGGCA316220.10243928402384826No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)