FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32233414
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC868360326.939755745388933No Hit
GATGCCAA772800523.975136484146546No Hit
CTCCTAGT770408223.900918469262983No Hit
AGGTATTG722505722.414805332131433No Hit
GCTGCCAA385930.11972979343733182No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)