FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31994353
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC1181608736.93178918167215No Hit
CATCACTT809750625.309172528039557No Hit
ACAATTCA777186824.291374168435286No Hit
GTGTGGAG328777310.276104036234145No Hit
CATCCCTT1091470.341144576356959No Hit
TGCGCCGC1019210.31855934076866627No Hit
CATCACTA520640.1627287165331957No Hit
ACAATTCC417220.1304042622771587No Hit
ACAATTAA403710.12618164211665728No Hit
TGCGCAGA347710.10867855336846473No Hit
CCAATTCA326810.10214615060351433No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)