FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31565758
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC1164319836.88553273455369No Hit
CATCACTT798542225.297735603244504No Hit
ACAATTCA768245124.337926559533276No Hit
GTGTGGAG322000610.200946227871354No Hit
CATCCCTT1094470.34672698181364753No Hit
TGCGCCGC1001170.3171696367944023No Hit
CATCACTA520580.16491921404200083No Hit
ACAATTCC427880.1355519484119469No Hit
ACAATTAA415400.1315982971167681No Hit
TGCGCAGA361300.11445947219135369No Hit
AGCGCAGC330040.10455633601448759No Hit
CCAATTCA317760.10066604451570592No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)