Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005092853 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 38058334 |
Sequences flagged as poor quality | 0 |
Sequence length | 26 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTCGTTATCGGAATTAACCAGACA | 38984 | 0.10243222942969601 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGTGGA | 18320 | 0.0 | 17.81785 | 1 |
GACTAAC | 12400 | 0.0 | 17.740557 | 1 |
CTCTACG | 21395 | 0.0 | 17.679016 | 1 |
CAATGGA | 19085 | 0.0 | 17.555634 | 8 |
ATGCGAT | 12515 | 0.0 | 17.481619 | 1 |
GGGCATC | 15670 | 0.0 | 17.45393 | 1 |
ACTGATG | 10770 | 0.0 | 17.360304 | 1 |
TGACAAC | 15575 | 0.0 | 17.219973 | 1 |
TGCGGGT | 13520 | 0.0 | 16.98125 | 1 |
CGGACAC | 14085 | 0.0 | 16.967701 | 1 |
AAACTAG | 12680 | 0.0 | 16.95953 | 3 |
CCCTCCT | 19950 | 0.0 | 16.848454 | 1 |
CGCTTCA | 13370 | 0.0 | 16.805136 | 1 |
TGACTAG | 12390 | 0.0 | 16.802135 | 1 |
CTACCCA | 19855 | 0.0 | 16.798069 | 1 |
CGTTGGG | 18655 | 0.0 | 16.784668 | 1 |
GTCGTAA | 15755 | 0.0 | 16.76925 | 1 |
CTGATAG | 10300 | 0.0 | 16.753887 | 1 |
TGTAAAC | 12560 | 0.0 | 16.749079 | 7 |
CGACCTT | 14175 | 0.0 | 16.732937 | 1 |