FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46862541
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC1430559130.52670788807632No Hit
CTGACGCG1260854726.90538483604634No Hit
TCCTTCTT971161520.72362017245288No Hit
AAAGAAGA813866817.367107771642175No Hit
CTGCCGCG2387830.509539164767015No Hit
AAAGAAGC1450550.3095329380453356No Hit
GGTAGTAC1063630.22696805962783792No Hit
TCCTTCTA1038920.2216951914749992No Hit
GGTCGTAA1024000.21851141191853No Hit
GGTCGTCC972560.20753462771043507No Hit
TCCTTATT702700.14994918862807716No Hit
AAAGCAGA601720.12840106130822057No Hit
CTGACGCA531340.11338266953983567No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)