FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45272607
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC1360347530.047916171472078No Hit
CTGACGCG1199482626.4946659687612No Hit
TCCTTCTT929308620.526951319591557No Hit
AAAGAAGA770914217.028270538959685No Hit
CTGCCGCG3204860.707902683845885No Hit
AAAGAAGC1939290.4283583669038542No Hit
GGTCGTCC1462140.32296350859582706No Hit
GGTAGTAC1281790.28312705738372873No Hit
GGTCGTAA1217660.26896175870764416No Hit
TCCTTCTA1029160.22732510190985908No Hit
TCCTTATT865150.19109789723397197No Hit
AAAGCAGA856570.18920271147627968No Hit
GGGCGTAC610190.13478128175830476No Hit
TCATTCTT537410.1187053354360618No Hit
ATGACGCG524580.11587139216436111No Hit
CTGACGAG519580.11476697155964533No Hit
GGTCGGAC506000.11176736519723726No Hit
CTGACGCA504820.11150672193452434No Hit
CTGACGCT456130.10075187408580204No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)