FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47989656
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGTAC1464622230.51953946075379No Hit
CTGACGCG1290998026.901588959087352No Hit
TCCTTCTT993038120.692753038279747No Hit
AAAGAAGA823974117.16982718109086No Hit
CTGCCGCG2708010.5642903545714101No Hit
AAAGAAGC1522460.3172475335101381No Hit
GGTCGTCC1129960.23545907476394495No Hit
TCCTTCTA1084680.2260237081090975No Hit
GGTAGTAC1042210.21717388430540113No Hit
GGTCGTAA979780.20416483085438247No Hit
AAAGCAGA653490.13617309530203758No Hit
TCCTTATT649470.1353354147818855No Hit
CTGACGCA547770.11414334789147061No Hit
GGGCGTAC485720.10121347817121257No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)