FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38694401
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT1163446230.067559386692665No Hit
GGATGCCG1063620427.48770810536646No Hit
TATGATTC820418721.202517129028564No Hit
ATGCTGAA760405619.651566643970014No Hit
CCCCCAGT589660.15238897224433065No Hit
GGCTGCCG461240.11920070813345837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)