FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37696708
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1038441827.547280786428352No Hit
TCAGCCGT999177826.505704423845177No Hit
GGTCAATA924590924.527099289412753No Hit
ATCTTTAG711404518.871793791648862No Hit
CAGCGGCC888740.23576063989460297No Hit
TCCGCCGT742660.1970092454757588No Hit
TCAGCCGA410020.10876811842561954No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)