FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37801213
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1044177927.62286755189576No Hit
TCAGCCGT1004973426.585744748455557No Hit
GGTCAATA929215124.581621229985398No Hit
ATCTTTAG712984118.86140796592956No Hit
CAGCGGCC801180.21194557962994467No Hit
TCCGCCGT686380.18157618381187926No Hit
TCAGCCGA402900.10658388131618952No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)