FastQCFastQC Report
Wed 8 May 2024
EGAF00005092935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37368737
Total Bases298.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1024151827.40664743365557No Hit
TCAGCCGT988168926.443732898973813No Hit
GGTCAATA915837424.508117574324228No Hit
ATCTTTAG704840718.86177475037489No Hit
CAGCGGCC1033670.2766135767446462No Hit
TCCGCCGT868310.23236268327720042No Hit
TCAGCCGA420590.11255130190779529No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)