FastQCFastQC Report
Wed 8 May 2024
EGAF00005092939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49988051
Total Bases399.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC1399548527.997660880997337No Hit
GCAGTAGA1390500427.816655624361108No Hit
AGTAGTCT1223804424.481938693709022No Hit
CAGTACTG914514718.29466605929485No Hit
TTCCCGCC913190.18268165726245258No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)