FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005092945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31653526
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1062047233.55225575817367No Hit
TACTATAG720450822.76052279294256No Hit
ACAAGGTA701263022.154340720209177No Hit
GTGGTACC592307818.712221823249646No Hit
GTGGTCCC495310.15647861789552292No Hit
CGTCCCGG464110.14662189608829046No Hit
CGTCCCGA463570.14645129898008835No Hit
GTGGTACA387620.12245713163203367No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)