FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005092947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005092947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31547901
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1062017633.66365324907036No Hit
TACTATAG717003722.727461329360708No Hit
ACAAGGTA700972422.219303908681596No Hit
GTGGTACC593270818.80539691055833No Hit
GTGGTCCC448850.1422757095630546No Hit
CGTCCCGA445410.14118530421405848No Hit
CGTCCCGG405750.12861394487069044No Hit
GTGGTACA376210.1192504059144854No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)