EGAF00005092980 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005092980
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14732553
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACTCA	4960	0.0	10.44954	9
GCCACTC	7085	0.0	7.4170184	8
AGCCACT	9585	0.0	6.158403	7
CACACGT	22115	0.0	5.826626	140-144
ACACGTC	21960	0.0	5.7628536	140-144
CACGTCT	20715	0.0	5.622697	140-144
GATCGGA	39065	0.0	5.598233	140-144
AGATCGG	42165	0.0	5.541757	140-144
AAGCCAC	10855	0.0	5.504205	6
GAGCACA	26865	0.0	5.503825	140-144
AGCACAC	25670	0.0	5.4908285	140-144
TAGATCG	12665	0.0	5.4792724	140-144
CTAGATC	2750	0.0	5.287736	140-144
GCACACG	25795	0.0	5.235382	140-144
TTAGATC	4775	0.0	5.155892	140-144
AGAGCAC	29425	0.0	5.1473103	140-144
CGTCTGA	21805	0.0	5.0048857	140-144