EGAF00005092981 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005092981
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14732553
Sequences flagged as poor quality	0
Sequence length	150
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCACTCA	5260	0.0	11.087047	9
GCCACTC	6890	0.0	7.8371596	8
AGCCACT	9685	0.0	6.2445436	7
GTTAGAC	8025	0.0	5.6696343	140-144
AAGCCAC	11190	0.0	5.662049	6
GTCGTGT	22225	0.0	5.6556883	140-144
GATCGGA	39150	0.0	5.5644236	140-144
AGATCGG	42425	0.0	5.4505043	140-144
TGTAGGG	18755	0.0	5.443048	140-144
TAGATCG	12285	0.0	5.2858443	140-144
CTAGATC	2805	0.0	5.235767	140-144
GTGTTAG	9885	0.0	5.229146	140-144
TCGTGTA	22425	0.0	5.1879034	140-144
GTAGGGA	17940	0.0	5.088383	140-144
TTAGACG	8420	0.0	5.0445557	140-144
GTGTAGG	21275	0.0	5.0284276	140-144